Walnut Genetic Diversity Investigation Using Phenological and Morphological Characteristics and ISSR Markers

Document Type : Original Research

Authors
1 Department of Agronomy and Plant Breeding, Faculty of Agriculture, Yasouj University, Yasouj, Islamic Republic of Iran.
2 Department of Agronomy and Horticultural Research, Agricultural, Education, and Natural Resources Research Center of Fars Province, Agricultural Research, Education and Promotion Organization, Shiraz, Islamic Republic of Iran.
Abstract
There is little information about the genetic resources of Persian walnut (Juglans regia L.), an important edible and one of the most important plants in pomology and economy in Iran. Germplasm identification and conservation are important and fundamental issues in breeding programs. Six regions in BoyerAhmad and Dena Counties were chosen, and 82 walnut genotypes were selected randomly. Annual growth period was short in Setangun and Ganjegun Regions (190-200 days), but in other investigated regions was long and more than 230 days. Maximum fruit and kernel weights were 63.44 and 8.35 g, respectively. The number of observed alleles ranged from seven (ISSR7A) to 14 (ISSR3A) for primers, and the Number of effective alleles (Ne) in the primers used was between 1.19 to 1.45. The highest Ne alleles belonged to the ISSR1A primer (1.445). Walnut genotypes showed the highest genetic diversity based on the information derived from ISSR1A and ISSR2A with PIC index of 0.44 and 0.41, respectively. The Nei's gene diversity ranged from 0.13 to 0.24, and the Shannon's index was from 0.23 to 0.44. In general, increase in the altitude and decrease in the temperature delayed phenological characteristics.Suitable genetic diversity was found among the genotypes, based on the morphological and phenological characteristics and the ISSR markers. Overall, the results are useful in walnut breeding and conservation programs, and by choosing late leafing and flowering genotypes from Setangun and Ganjegun Regions, it would be possible to reduce the risks of late spring frost.

Keywords

Subjects


Amiri Fahliani, R., Khodambashi, M., Houshmand, S., Arzani, A. and Sorkheh, K. 2011. Heritability for some agronomic characters of rice (Oryza sativa L.) and their linked microsatellites identification. Turk. J. Agr. For., 35: 481- 490
Arzani, K., Mansouri Ardakan, H., Vezvaei, A. and Roozban, M.R. 2008. Morphological variation among Persian walnut (Juglans regia L.) genotypes from central Iran. New Zeal. J. Crop hort., 36: 159-168
Ashraf, J., Malik, W., Iqbal, M.Z., Ali Khan, A., Qayyum, A., Noor, E., Abid, M.A. and Naseer H.M. 2016. Cheema, and M. Q. Ahmad. 2016. Comparative Analysis of Genetic Diversity among Bt Cotton Genotypes Using EST-SSR, ISSR and Morphological Markers. J. Agr. Sci. Tech., 18: 517-531
Botestien, D.R.L., White, M., Skolnick, W. and Davis, R. 1980. Construction of genetic linkage map in human restriction fragment length polymorphism. Am. J. Hum. Biol., 32: 314-321
Christopoulos, M., Rouskas D., Tsantili, E. and Bebeli, P. 2010. Germplasm diversity and genetic relationships among walnut (Juglans regia L.) cultivars and Greek local selections revealed by Inter-Simple Sequence Repeat (ISSR) markers. Sci. Hort., 125: 584-592
Davoodi, F., Rezaei, M., Heidari, P. and Hokmabadi, H. 2019. Genetic Diversity of Superior Walnut Genotypes Revealed by ISSR Markers in Shahrood, Iran. J. Hort. Sci., 32(4): 593- 604 (English Abstract)
Dilsat Yegenoglu, E. and Sesli, M. 2017. Assessment of Genetic Relations among Cultivated Olives by ISSR Markers. J. Agr. Sci. Tech., 19: 1333-1343
Dogan, Y., Kafkas, S., Sutyemez, M., Akca, Y. and Turemis, N. 2014. Assessment and characterization of genetic relationships of walnut (Juglans regia L.) genotypes by three types of molecular markers. Sci. Hort., 168: 81-87.
Doyle, J.J. and Doyle, J.L. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bull., 19: 11-15.
Ebrahimi, A., Fatahi, M. R., Zamani, Z. A., and Vahdati, K. 2010. An investigation on genetic diversity of 608 Persian walnut accessions for screening of some genotypes of superior traits. Iranian J. Hort. Sci., 40(4): 83-94
Ehteshamnia, A., Sharifani, M., Vahdati, K. and Erfani, V. 2009. Investigation of genetic diversity among native populations of walnut (Juglans regia) in Golestan by SSR markers. J. plant prod., 16(4): 39-58 (English Abstract)
IPGRI. 1994. Descriptors for walnut (Juglans spp.). International Plant Genetic Resources Institute, Rome, Italy.
Ji, A., Wang, Y., Wu, G., Wu, W., Yang, H. and Wang, Q. 2014. Genetic diversity and population structure of north china mountain walnut revealed by ISSR. Am. J. Plant Sci., 5: 3194-3202
Jones, N., Ougham, H., Thomas, H. and Pasakinskiene, I. 2009. Markers and mapping revisited: finding your gene. New Phytol., 183: 935-966.
Maghsoodi, M., Sheidai, M. and Koohdar, F. 2018. Population genetic study in Juglans regia L. (Persian walnut) and its taxonomic status within the genus Juglans L. Phytotaxa 376: 154–166.
Mahmoodi, R., Rahman F. and Paktarmani, R. 2012. Genetic Diversity of Persian Walnut from Iran as Revealed by Inter-Simple Sequence Repeat (ISSR) Markers. J. Am. Pomol. Soc., 66:101-106.
Malvolti, M. E., Pollegioni, P. and Bertani, A. 2010. Juglans regia research by molecular, morphological and biochemical markers: A case study in Italy. Global Science Books 84-92
McGranahan, G. and Leslie, C. 2012. Walnut. In: Badenes, M.L. and Byrne, D.H. (eds) Fruit Breeding, 1st ed. Springer, New York Dordrecht Heidelberg, London, pp 827- 846.
Mousavi, A., Tatary, m., Moradi, H. and Hasani, D. 2015. Evaluation of genetic diversity among the superior walnut genotypes based on pathology and phenological traits in Chahar Mahal and Bakhtiari province. J. Plant Seed Breed., 1: 365- 389. (English Abstract)
Nunes, C.F., Ferreira, J.L., Generoso, A.L., Dias, M.S.C., Pasqual, M. and Cancado, G.M.A. 2013. The genetic diversity of strawberry hybrids based on ISSR markers. Acta Sci. Agron., 35 (4): 443-452.
Potter, D., Gao, F., Aiello, G., Leslie, C. and McGranahan, G. 2002. Inter simple sequence repeat markers for fingerprinting and determining genetic relationships of walnut (Juglans regia) Cultivars. J. Am. Soc. Hortic. Sci., 127: 75-81.
PradeepReddy, M., Sarla, N. and Siddiq, EA. 2002. Inter simple sequence repeat (ISSR) polymorphism and its application in plant breeding. Euphytica 128: 9-17.
Safari, M. and Alizadeh, H. 2007. Oil Composition of Iranian Major Nuts. J. Agr. Sci. Tech., 9: 251-256.
Sarikhani Khorami, S., Arzani, K. and Roozban, M.R. 2014. Correlation of certain high heritability horticultural traits in Persian walnut (Juglans regia L.). Acta Horticulturae 1050: 61-68.
Sharma, S.H. and Sharma, O.C. 2001. Studies on variation in nut and kernel characters and selection of superior walnut seedlings (Juglans regia L.) from Garsa and Jogindernagar areas of Himachal Pradesh. Acta Hortic., 544: 47-50.
Solar, A., Smole, J. and Stampar, F. 1994. Characterization of isozyme variation in walnut. Euphytica 77: 105-112.
Vahdati, K., Mohseni Pourtaklu, S., Karimi, R., Barzehkar, R., Amiri, R., Mozaffari, M. and Woeste, K. 2015. Genetic diversity and gene flow of some Persian walnut populations in southeast of Iran revealed by SSR markers. ‎Plant Syst. Evol., 301: 691-699.
Wani, N., Ashraf Bhat, M., Feza Ahmad, M., Akther, S., Razvi, S.M., Mir, M.R., Rashid, R. and Bhat, K.A. 2010. Molecular markers and their application in walnut improvement. Int. J. Curr. Res., 3: 6-11.
Yarilgac, T., Koyuncu, F., Koyuncu, M.A., Kazankaya, A. and Sen, S.M. 2001. Some promising walnut selections (Juglans regia L.). Acta Hortic., 544: 93-100.